Add entry by Andrew Sun

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Andrew Sun 2024-01-07 04:00:58 -05:00 committed by GitHub
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calculate_average_asun.sh Executable file
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#!/bin/sh
#
# Copyright 2023 The original authors
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# Uncomment below to use sdk
# source "$HOME/.sdkman/bin/sdkman-init.sh"
# sdk use java 21.0.1-graal 1>&2
JAVA_OPTS="--enable-preview --add-modules jdk.incubator.vector -XX:+UnlockExperimentalVMOptions -Xms500m -Xmx500m -XX:CompilationMode=high-only"
time java $JAVA_OPTS --class-path target/average-1.0.0-SNAPSHOT.jar dev.morling.onebrc.CalculateAverage_asun

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/*
* Copyright 2023 The original authors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package dev.morling.onebrc;
import jdk.incubator.vector.*;
import java.io.File;
import java.io.IOException;
import java.io.RandomAccessFile;
import java.lang.foreign.MemorySegment;
import java.lang.foreign.ValueLayout;
import java.nio.ByteOrder;
import java.nio.channels.FileChannel;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.StandardOpenOption;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.TreeMap;
import java.util.concurrent.ExecutionException;
import java.util.stream.Collectors;
// based on spullara's submission
public class CalculateAverage_asun {
private static final String FILE = "./measurements.txt";
private static final VectorSpecies<Byte> BYTE_SPECIES = ByteVector.SPECIES_256;
private static final VectorSpecies<Integer> INT_SPECIES = IntVector.SPECIES_256;
private static final int VECTOR_SIZE = 32;
private static final ByteVector ASC;
static {
byte[] bytes = new byte[VECTOR_SIZE];
for (int i = 0; i < VECTOR_SIZE; i++) {
bytes[i] = (byte) i;
}
ASC = ByteVector.fromArray(BYTE_SPECIES, bytes, 0);
}
public static void main(String[] args) throws IOException, ExecutionException, InterruptedException {
long start = System.currentTimeMillis();
var filename = args.length == 0 ? FILE : args[0];
var file = new File(filename);
List<FileSegment> fileSegments = getFileSegments(file);
// System.out.println(System.currentTimeMillis() - start);
var resultsMap = fileSegments.stream().map(segment -> {
var resultMap = new ByteArrayToResultMap();
long segmentEnd = segment.end();
try (var fileChannel = (FileChannel) Files.newByteChannel(Path.of(filename), StandardOpenOption.READ)) {
var bb = fileChannel.map(FileChannel.MapMode.READ_ONLY, segment.start(), segmentEnd - segment.start());
var ms = MemorySegment.ofBuffer(bb);
// Up to 100 characters for a city name
var buffer = new byte[100 + VECTOR_SIZE];
long startLine;
long pos = 0;
long limit = ms.byteSize();
long vectorLimit = limit - VECTOR_SIZE;
// int[] lastHashMult = new int[]{ 7, 31, 63, 15, 255, 127, 3, 511 };
// IntVector lastMul = IntVector.fromArray(INT_SPECIES, lastHashMult, 0);
vector: while ((startLine = pos) < vectorLimit) {
long currentPosition = startLine;
ByteVector r;
VectorMask<Byte> m;
int offset = 0;
IntVector h = IntVector.zero(INT_SPECIES);
while (true) {
if (currentPosition >= vectorLimit) {
break vector;
}
r = ByteVector.fromMemorySegment(BYTE_SPECIES, ms, currentPosition, ByteOrder.LITTLE_ENDIAN);
r.intoArray(buffer, offset);
offset += VECTOR_SIZE;
m = r.eq((byte) ';');
if (m.anyTrue()) {
int firstTrue = m.firstTrue();
currentPosition += firstTrue;
// note: target platform likely does not have AVX-512, so manipulating and using m directly is likely to be slow
ByteVector lastMask = (ByteVector) ASC.lt((byte) firstTrue).toVector();
h = h.mul(31);
h = h.add(r.and(lastMask).reinterpretAsInts());
break;
}
else {
currentPosition += VECTOR_SIZE;
h = h.mul(31);
h = h.add(r.reinterpretAsInts());
}
}
// h = h.mul(lastMul);
int hash = h.reduceLanes(VectorOperators.ADD);
// currentPosition now has index of semicolon
int nameLen = (int) (currentPosition - startLine);
currentPosition++;
if (currentPosition >= limit - 8) {
break;
}
long g = ms.get(ValueLayout.JAVA_LONG_UNALIGNED, currentPosition);
int negative = (g & 0xff) == '-' ? -1 : 1;
// 00101101 MINUS
// 00101110 PERIOD
// 00001101 CR
// 00001010 LF
// 00110000 0
// 00111001 9
// scan for LF
long lf = ~g & 0x20202020202020L;
int tzc = Long.numberOfTrailingZeros(lf);
long bytesToLF = tzc / 8;
int shift = 64 - tzc & 0b111000;
long reversedDigits = Long.reverseBytes(g) >> shift;
long digitBits = reversedDigits & (0x1010101010101010L >> shift);
long digitsExt = (digitBits >> 1 | digitBits >> 2 | digitBits >> 3 | digitBits >> 4);
long digitsOnly = Long.compress(reversedDigits, digitsExt);
long temp = (digitsOnly & 0xf)
+ 10 * ((digitsOnly >> 4) & 0xf)
+ 100 * ((digitsOnly >> 8) & 0xf);
temp *= negative;
currentPosition += bytesToLF + 1;
resultMap.putOrMerge(buffer, 0, nameLen, temp, hash);
pos = currentPosition;
}
while ((startLine = pos) < limit) {
long currentPosition = startLine;
byte b;
int offset = 0;
while (currentPosition != segmentEnd && (b = ms.get(ValueLayout.JAVA_BYTE, currentPosition++)) != ';') {
buffer[offset++] = b;
}
// Invariant: the remaining length is less than VECTOR_SIZE, so we can just run the last round of hashing
int hash = ByteVector.fromArray(BYTE_SPECIES, buffer, 0, ASC.lt((byte) offset))
.reinterpretAsInts()
// .mul(lastMul)
.reduceLanes(VectorOperators.ADD);
int temp;
int negative = 1;
// Inspired by @yemreinci to unroll this even further
if (ms.get(ValueLayout.JAVA_BYTE, currentPosition) == '-') {
negative = -1;
currentPosition++;
}
if (ms.get(ValueLayout.JAVA_BYTE, currentPosition + 1) == '.') {
temp = negative * ((ms.get(ValueLayout.JAVA_BYTE, currentPosition) - '0') * 10 + (ms.get(ValueLayout.JAVA_BYTE, currentPosition + 2) - '0'));
currentPosition += 3;
}
else {
temp = negative * ((ms.get(ValueLayout.JAVA_BYTE, currentPosition) - '0') * 100
+ ((ms.get(ValueLayout.JAVA_BYTE, currentPosition + 1) - '0') * 10 + (ms.get(ValueLayout.JAVA_BYTE, currentPosition + 3) - '0')));
currentPosition += 4;
}
if (ms.get(ValueLayout.JAVA_BYTE, currentPosition) == '\r') {
currentPosition++;
}
currentPosition++;
resultMap.putOrMerge(buffer, 0, offset, temp, hash);
pos = currentPosition;
}
return resultMap;
}
catch (IOException e) {
throw new RuntimeException(e);
}
}).parallel().flatMap(partition -> partition.getAll().stream())
.collect(Collectors.toMap(e -> new String(e.key()), Entry::value, CalculateAverage_asun::merge, TreeMap::new));
System.out.println(resultsMap);
// System.out.println(System.currentTimeMillis() - start);
Runtime.getRuntime().halt(0);
}
private static List<FileSegment> getFileSegments(File file) throws IOException {
int numberOfSegments = Runtime.getRuntime().availableProcessors() * 8;
long fileSize = file.length();
long segmentSize = fileSize / numberOfSegments;
List<FileSegment> segments = new ArrayList<>(numberOfSegments);
// Pointless to split small files
if (segmentSize < 1_000_000) {
segments.add(new FileSegment(0, fileSize));
return segments;
}
try (RandomAccessFile randomAccessFile = new RandomAccessFile(file, "r")) {
for (int i = 0; i < numberOfSegments; i++) {
long segStart = i * segmentSize;
long segEnd = (i == numberOfSegments - 1) ? fileSize : segStart + segmentSize;
segStart = findSegment(i, 0, randomAccessFile, segStart, segEnd);
segEnd = findSegment(i, numberOfSegments - 1, randomAccessFile, segEnd, fileSize);
segments.add(new FileSegment(segStart, segEnd));
}
}
return segments;
}
private static Result merge(Result v, Result value) {
return merge(v, value.min, value.max, value.sum, value.count);
}
private static Result merge(Result v, long value, long value1, long value2, long value3) {
v.min = Math.min(v.min, value);
v.max = Math.max(v.max, value1);
v.sum += value2;
v.count += value3;
return v;
}
private static long findSegment(int i, int skipSegment, RandomAccessFile raf, long location, long fileSize) throws IOException {
if (i != skipSegment) {
raf.seek(location);
while (location < fileSize) {
location++;
if (raf.read() == '\n')
break;
}
}
return location;
}
static class Result {
long min, max, sum;
long count;
Result(long value) {
min = max = sum = value;
this.count = 1;
}
@Override
public String toString() {
return round(min) + "/" + round((sum / 10.0) / count) + "/" + round(max);
}
double round(double v) {
return Math.round(v * 10.0) / 10.0;
}
double round(long v) {
return v / 10.0;
}
}
record Entry(byte[] key, Result value) {
}
record FileSegment(long start, long end) {
}
static class ByteArrayToResultMap {
public static final int MAPSIZE = 1024 * 128;
Result[] slots = new Result[MAPSIZE];
byte[][] keys = new byte[MAPSIZE][];
public void putOrMerge(byte[] key, int offset, int size, long temp, int hash) {
int slot = hash & (slots.length - 1);
var slotValue = slots[slot];
// Linear probe for open slot
while (slotValue != null && (keys[slot].length != size || !Arrays.equals(keys[slot], 0, size, key, offset, size))) {
slot = (slot + 1) & (slots.length - 1);
slotValue = slots[slot];
}
Result value = slotValue;
if (value == null) {
slots[slot] = new Result(temp);
byte[] bytes = new byte[size];
System.arraycopy(key, offset, bytes, 0, size);
keys[slot] = bytes;
}
else {
value.min = Math.min(value.min, temp);
value.max = Math.max(value.max, temp);
value.sum += temp;
value.count += 1;
}
}
// Get all pairs
public List<Entry> getAll() {
List<Entry> result = new ArrayList<>(slots.length);
for (int i = 0; i < slots.length; i++) {
Result slotValue = slots[i];
if (slotValue != null) {
result.add(new Entry(keys[i], slotValue));
}
}
return result;
}
}
}